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Maxime Devos be1c6cc95e Add channels.scm 2 years ago
.gitignore 1476ecd172 Ignore things. 2 years ago
COPYING 920a05d4a8 License: GPL3+ 2 years ago
README 0d4d528fad Update README. 2 years ago
all-the-plots.sh 7434b6981a Increase memory quotum for all-the-plots.sh 2 years ago
channels.scm be1c6cc95e Add channels.scm 2 years ago
construct-diffusion-map.py feeb3e3fa7 Avoid trimming along dimensions with size 1 2 years ago
courtemanche2D_kleinere_diffusionmaps.py 15b505211f Add various untracked python scripts 2 years ago
courtemanche2D_phases.py 15b505211f Add various untracked python scripts 2 years ago
dimensiereductie.py 15b505211f Add various untracked python scripts 2 years ago
dimensiereductie_AP_veelpunten.py 15b505211f Add various untracked python scripts 2 years ago
dimensiereductie_AP_verbeterd.py 15b505211f Add various untracked python scripts 2 years ago
dimensiereductie_BOFC_verbeterd.py 15b505211f Add various untracked python scripts 2 years ago
dimensiereductie_PDL_9010.py 15b505211f Add various untracked python scripts 2 years ago
dimensiereductie_courtemanche.py 15b505211f Add various untracked python scripts 2 years ago
dimensiereductie_courtemanche1D.py 15b505211f Add various untracked python scripts 2 years ago
dimensiereductie_courtemanche2D_1.py 15b505211f Add various untracked python scripts 2 years ago
dimensiereductie_courtemanche2D_spiraal.py 15b505211f Add various untracked python scripts 2 years ago
manifest.scm 55a66cf0cf Add Guix manifest 2 years ago
plot-diffusion-map.py d6d3bba04b Remove xlabels and ylabels from plots as they are redundant. 2 years ago
plot-some-times.py 7a56881f63 Make a standalone colourbar. 2 years ago
plot.py 15b505211f Add various untracked python scripts 2 years ago

README

The license is the GNU General Public License, with the or-later option, see COPYING for details.

There are four main scripts:

* construct-diffusion-map.py

This script takes ithildin simulation data and some parameters as input
and calculates a diffusion map as output.

* plot-diffusion-map.py

This script takes a diffusion map as input and visualises it with various
plots.

* plot-some-times.py, all-the-plots.sh

This generates all plots for the paper, and some more.

TODO:

* Publiceren: https://gitlab.kuleuven.be/heartkor?
* https://gitlab.com/heartkor/ ?
* probably some (all?) of the gc.collect() are pointless.