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- " Vim syntax file
- " Language: AceDB model files
- " Maintainer: Stewart Morris (Stewart.Morris@ed.ac.uk)
- " Last change: Thu Apr 26 10:38:01 BST 2001
- " URL: http://www.ed.ac.uk/~swmorris/vim/acedb.vim
- " Syntax file to handle all $ACEDB/wspec/*.wrm files, primarily models.wrm
- " AceDB software is available from http://www.acedb.org
- " quit when a syntax file was already loaded
- if exists("b:current_syntax")
- finish
- endif
- syn keyword acedbXref XREF
- syn keyword acedbModifier UNIQUE REPEAT
- syn case ignore
- syn keyword acedbModifier Constraints
- syn keyword acedbType DateType Int Text Float
- " Magic tags from: http://genome.cornell.edu/acedocs/magic/summary.html
- syn keyword acedbMagic pick_me_to_call No_cache Non_graphic Title
- syn keyword acedbMagic Flipped Centre Extent View Default_view
- syn keyword acedbMagic From_map Minimal_view Main_Marker Map Includes
- syn keyword acedbMagic Mapping_data More_data Position Ends Left Right
- syn keyword acedbMagic Multi_Position Multi_Ends With Error Relative
- syn keyword acedbMagic Min Anchor Gmap Grid_map Grid Submenus Cambridge
- syn keyword acedbMagic No_buttons Columns Colour Surround_colour Tag
- syn keyword acedbMagic Scale_unit Cursor Cursor_on Cursor_unit
- syn keyword acedbMagic Locator Magnification Projection_lines_on
- syn keyword acedbMagic Marker_points Marker_intervals Contigs
- syn keyword acedbMagic Physical_genes Two_point Multi_point Likelihood
- syn keyword acedbMagic Point_query Point_yellow Point_width
- syn keyword acedbMagic Point_pne Point_pe Point_nne Point_ne
- syn keyword acedbMagic Derived_tags DT_query DT_width DT_no_duplicates
- syn keyword acedbMagic RH_data RH_query RH_spacing RH_show_all
- syn keyword acedbMagic Names_on Width Symbol Colours Pne Pe Nne pMap
- syn keyword acedbMagic Sequence Gridded FingerPrint In_Situ Cosmid_grid
- syn keyword acedbMagic Layout Lines_at Space_at No_stagger A1_labelling
- syn keyword acedbMagic DNA Structure From Source Source_Exons
- syn keyword acedbMagic Coding CDS Transcript Assembly_tags Allele
- syn keyword acedbMagic Display Colour Frame_sensitive Strand_sensitive
- syn keyword acedbMagic Score_bounds Percent Bumpable Width Symbol
- syn keyword acedbMagic Blixem_N Address E_mail Paper Reference Title
- syn keyword acedbMagic Point_1 Point_2 Calculation Full One_recombinant
- syn keyword acedbMagic Tested Selected_trans Backcross Back_one
- syn keyword acedbMagic Dom_semi Dom_let Direct Complex_mixed Calc
- syn keyword acedbMagic Calc_upper_conf Item_1 Item_2 Results A_non_B
- syn keyword acedbMagic Score Score_by_offset Score_by_width
- syn keyword acedbMagic Right_priority Blastn Blixem Blixem_X
- syn keyword acedbMagic Journal Year Volume Page Author
- syn keyword acedbMagic Selected One_all Recs_all One_let
- syn keyword acedbMagic Sex_full Sex_one Sex_cis Dom_one Dom_selected
- syn keyword acedbMagic Calc_distance Calc_lower_conf Canon_for_cosmid
- syn keyword acedbMagic Reversed_physical Points Positive Negative
- syn keyword acedbMagic Point_error_scale Point_segregate_ordered
- syn keyword acedbMagic Point_symbol Interval_JTM Interval_RD
- syn keyword acedbMagic EMBL_feature Homol Feature
- syn keyword acedbMagic DT_tag Spacer Spacer_colour Spacer_width
- syn keyword acedbMagic RH_positive RH_negative RH_contradictory Query
- syn keyword acedbMagic Clone Y_remark PCR_remark Hybridizes_to
- syn keyword acedbMagic Row Virtual_row Mixed In_pool Subpool B_non_A
- syn keyword acedbMagic Interval_SRK Point_show_marginal Subsequence
- syn keyword acedbMagic Visible Properties Transposon
- syn match acedbClass "^?\w\+\|^#\w\+"
- syn match acedbComment "//.*"
- syn region acedbComment start="/\*" end="\*/"
- syn match acedbComment "^#\W.*"
- syn match acedbHelp "^\*\*\w\+$"
- syn match acedbTag "[^^]?\w\+\|[^^]#\w\+"
- syn match acedbBlock "//#.\+#$"
- syn match acedbOption "^_[DVH]\S\+"
- syn match acedbFlag "\s\+-\h\+"
- syn match acedbSubclass "^Class"
- syn match acedbSubtag "^Visible\|^Is_a_subclass_of\|^Filter\|^Hidden"
- syn match acedbNumber "\<\d\+\>"
- syn match acedbNumber "\<\d\+\.\d\+\>"
- syn match acedbHyb "\<Positive_\w\+\>\|\<Negative\w\+\>"
- syn region acedbString start=/"/ end=/"/ skip=/\\"/ oneline
- " Rest of syntax highlighting rules start here
- " Define the default highlighting.
- " Only when an item doesn't have highlighting yet
- hi def link acedbMagic Special
- hi def link acedbHyb Special
- hi def link acedbType Type
- hi def link acedbOption Type
- hi def link acedbSubclass Type
- hi def link acedbSubtag Include
- hi def link acedbFlag Include
- hi def link acedbTag Include
- hi def link acedbClass Todo
- hi def link acedbHelp Todo
- hi def link acedbXref Identifier
- hi def link acedbModifier Label
- hi def link acedbComment Comment
- hi def link acedbBlock ModeMsg
- hi def link acedbNumber Number
- hi def link acedbString String
- let b:current_syntax = "acedb"
- " The structure of the model.wrm file is sensitive to mixed tab and space
- " indentation and assumes tabs are 8 so...
- se ts=8
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